Motif 6

Information for 4-CGACCCGCCGGCG (Motif 6)

Reverse Opposite:

p-value:	1e-8
log p-value:	-1.937e+01
Information Content per bp:	1.747
Number of Target Sequences with motif	33.0
Percentage of Target Sequences with motif	3.54%
Number of Background Sequences with motif	514.3
Percentage of Background Sequences with motif	1.06%
Average Position of motif in Targets	46.2 +/- 22.7bp
Average Position of motif in Background	48.7 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)	-0.2
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:	1
Score:	0.65
Offset:	-2
Orientation:	forward strand
Alignment:	--CGACCCGCCGGCG-- TACGCCCCGCCACTCTG

SP2/MA0516.1/Jaspar

Match Rank:	2
Score:	0.62
Offset:	1
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG--- -GCCCCGCCCCCTCCC

Sp1(Zf)/Promoter/Homer

Match Rank:	3
Score:	0.62
Offset:	0
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG GGCCCCGCCCCC-

EGR1/MA0162.2/Jaspar

Match Rank:	4
Score:	0.59
Offset:	1
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG-- -CCCCCGCCCCCGCC

SP1/MA0079.3/Jaspar

Match Rank:	5
Score:	0.59
Offset:	1
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG -GCCCCGCCCCC-

PB0010.1_Egr1_1/Jaspar

Match Rank:	6
Score:	0.57
Offset:	3
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG---- ---TCCGCCCCCGCATT

KLF16/MA0741.1/Jaspar

Match Rank:	7
Score:	0.57
Offset:	1
Orientation:	forward strand
Alignment:	CGACCCGCCGGCG -GCCACGCCCCC-

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:	8
Score:	0.57
Offset:	1
Orientation:	reverse strand
Alignment:	CGACCCGCCGGCG -GCTCCGCCCMCY

E2F4/MA0470.1/Jaspar

Match Rank:	9
Score:	0.57
Offset:	-1
Orientation:	reverse strand
Alignment:	-CGACCCGCCGGCG NNTTCCCGCCC---

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:	10
Score:	0.57
Offset:	1
Orientation:	reverse strand
Alignment:	CGACCCGCCGGCG -GCCMCGCCCMCY