Information for 2-CCGGSCTGGC (Motif 3)

G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C
Reverse Opposite:
A T C G T A G C A T G C C G T A C A T G A T C G G A T C T A G C A T C G C T A G
p-value:1e-10
log p-value:-2.432e+01
Information Content per bp:1.731
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif13.21%
Number of Background Sequences with motif3431.4
Percentage of Background Sequences with motif7.06%
Average Position of motif in Targets51.8 +/- 26.3bp
Average Position of motif in Background50.5 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGGSCTGGC
-AGGCCTAG-
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CCGGSCTGGC---
----NTTGGCANN
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCGGSCTGGC-
-----TTGGCA
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CCGGSCTGGC
GGGGCCGAGGCCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCGGSCTGGC--
----CTTGGCAA
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCGGSCTGGC--
---GGTTGGCAT
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCGGSCTGGC--
--GGTCTGGCAT
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCGGSCTGGC
-AGGCCTNG-
 G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCGGSCTGGC-----
NGTAGGTTGGCATNNN
 A C G T G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCGGSCTGGC---
CAAAGGCGTGGCCAG
 A C G T A C G T G A T C A T G C A T C G C T A G A T G C G T A C A C G T T A C G A T C G A T G C A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G