Information for 4-GCGGGTTTCC (Motif 6)

A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
Reverse Opposite:
C T A G T A C G C G T A C T G A C T G A A G T C G T A C G A T C A T C G G T A C
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.821
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif329.0
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets58.1 +/- 26.9bp
Average Position of motif in Background49.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCGGGTTTCC
GGGGATTTCC
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCGGGTTTCC
GGGGATTTCC
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCGGGTTTCC
GGGAATTTCC
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCGGGTTTCC-
NGGGGATTTCCC
 A C G T A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGGGTTTCC---
---ATTTTCCATT
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCGGGTTTCC
GGGAATTTCC
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCGGGTTTCC--
--TGGTTTCAGT
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C A C G T A C G T
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCGGGTTTCC---
---ATTTTCCATT
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCGGGTTTCC-
----TTTTCCA
 A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C A C G T
A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCGGGTTTCC
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C C T A G A C T G C T A G G A C T A G C T A C G T A T G C A G T C
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A