Information for 5-CAGAAACGGA (Motif 13)

G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A
Reverse Opposite:
A G C T A G T C G T A C C T A G A C G T A G C T A G C T G T A C A C G T C A T G
p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.839
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif96.8
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets46.7 +/- 25.8bp
Average Position of motif in Background57.6 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAGAAACGGA---
-AGAAACGAAAGT
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGAAACGGA----
--GAAACTGAAACT
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGAAACGGA--
--NHAACBGYYV
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T
A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGAAACGGA
CCGCATAGCAACGGA
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGAAACGGA----
--GAAAGTGAAAGT
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGAAACGGA----
--GAAAMTGAAACT
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

IRF8/MA0652.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGAAACGGA----
TCGAAACCGAAACT
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T
G A C T G A T C C T A G G T C A C G T A C G T A T A G C G A T C A C T G C T G A C G T A G T C A A T G C G A C T

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGAAACGGA------
-AAAAACGGATTATTG
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

ETV2/MA0762.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGAAACGGA----
---AACCGGAAATA
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A T A G C T G A C A C T G A C T G C G T A G C T A T C G A A G C T C T G A

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGAAACGGA--
----AACCGANA
 G T A C C G T A A C T G C T G A C T G A G T C A G A T C A C T G T C A G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A