Information for 2-RCCKCYSTGAAGA (Motif 3)

C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C C G A T A C G T A G T C C G T A T A C G C T A G A C T G G T C A A C T G A C T G A G C T
p-value:1e-13
log p-value:-3.117e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.7 +/- 18.4bp
Average Position of motif in Background49.7 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:RCCKCYSTGAAGA
-------NGAAGC
 C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-RCCKCYSTGAAGA
GTCCGCCATTA---
 A C G T C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.49
Offset:1
Orientation:forward strand
Alignment:RCCKCYSTGAAGA
-CTTCCNGGAA--
 C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--RCCKCYSTGAAGA--
AGGACGCTGTAAAGGGA
 A C G T A C G T C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.48
Offset:0
Orientation:forward strand
Alignment:RCCKCYSTGAAGA
NTTTCCNGGAAA-
 C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A A C G T

STAT3/MA0144.2/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:forward strand
Alignment:RCCKCYSTGAAGA
-CTTCTGGGAAA-
 C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-RCCKCYSTGAAGA
NNCTTCCNGGAAGN
 A C G T C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:RCCKCYSTGAAGA
---CCTTTGATGT
 C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

GLIS3/MA0737.1/Jaspar

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--RCCKCYSTGAAGA
GACCCCCCACGAAG-
 A C G T A C G T C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A C T G T C G A A G T C A G T C G A T C A G T C G T A C A G T C C T G A A G T C C T A G C G T A G T C A A T C G A C G T

Stat4/MA0518.1/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--RCCKCYSTGAAGA
NNNTTTCCTGGAAA-
 A C G T A C G T C T G A A G T C A G T C C A G T A G T C A G T C A T G C A C G T A C T G C G T A C G T A A C T G C G T A
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A A C G T