Information for 7-TCGATGAAAA (Motif 12)

A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A
Reverse Opposite:
A C G T C G A T A G C T A C G T A G T C C G T A A G C T A G T C A C T G G T C A
p-value:1e-9
log p-value:-2.212e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.1 +/- 29.3bp
Average Position of motif in Background40.7 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCGATGAAAA---
---ATGAATATTC
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCGATGAAAA--
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCGATGAAAA--
--AATGGAAAAT
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCGATGAAAA-
TAATTCAATGAAGTG
 A C G T A C G T A C G T A C G T A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

NFAT5/MA0606.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCGATGAAAA--
--NATGGAAAAN
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCGATGAAAA
---ATTAAA-
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCGATGAAAA---
---ATGMATATDC
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCGATGAAAA----
--TATGCWAATBAV
 A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCGATGAAAA--
TCTTTCGAGGAATTTG
 A C G T A C G T A C G T A C G T A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A A C G T A C G T
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G

CUX2/MA0755.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCGATGAAAA
TTATCGATTA---
 A C G T A C G T A C G T A C G T T A G C C T A G C T G A A C G T A C T G C G T A C T G A C G T A C G T A
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T A C G T