Information for 13-GGCAATCAGC (Motif 22)

C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
Reverse Opposite:
A T C G G T A C C G A T C T A G T C G A G C A T A C G T T C A G G A T C G A T C
p-value:1e-5
log p-value:-1.362e+01
Information Content per bp:1.685
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif619.2
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets50.0 +/- 26.8bp
Average Position of motif in Background50.4 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGCAATCAGC
-CCAATCAA-
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGC
GGCCATTAAC
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

EN2/MA0642.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGC
CCCAATTAGC
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GGCAATCAGC-----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0024.1_Dlx5/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAATCAGC----
GGGGTAATTAGCTCTG
 A C G T A C G T C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GGCAATCAGC---
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGCAATCAGC
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

GBX2/MA0890.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGC
ACCAATTAGC
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCAATCAGC
NCCAATTANC
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C

GBX1/MA0889.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGC
ACTAATTAGC
 C T A G C T A G A G T C T G C A C G T A A G C T G A T C G C T A C A T G T A G C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C