Information for 5-AAGGTACGAA (Motif 10)

G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A
Reverse Opposite:
G C A T A G C T G T A C T C A G A C G T C T G A G T A C A G T C G A C T C A G T
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.707
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif149.4
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets44.5 +/- 28.5bp
Average Position of motif in Background48.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA
AAGGTGTGAA
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AAGGTACGAA-
-AGGTGTTAAT
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AAGGTACGAA-
-AGGTGTGAAA
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA---
AAGGTGTGAAAAT
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AAGGTACGAA----
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA
AAGGTGTKAA
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA-
TAGGTGTGAAG
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA-
AAGGTGTGAAA
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGGTACGAA-
CAGGTAAGTAT
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGGTACGAA
-AGGTGTGA-
 G T C A C T G A C T A G A C T G G A C T T G C A A G T C C A T G C T G A C G T A
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T