Information for 3-CAGAGGGCGCTGT (Motif 2)

A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C G T A C A C G T A G T C A C G T A C T G
p-value:1e-18
log p-value:-4.365e+01
Information Content per bp:1.897
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.9 +/- 13.1bp
Average Position of motif in Background75.0 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCGCTGT--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGGGCGCTGT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGGCGCTGT
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGAGGGCGCTGT-------
---AGGACGCTGTAAAGGGA
 A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGAGGGCGCTGT-------
---AAGACGCTGTAAAGCGA
 A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGAGGGCGCTGT-------
---AAGACGCTGTAAAGCGA
 A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCGCTGT
AACAGATGGC-----
 A C G T A C G T A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGCGCTGT-
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGAGGGCGCTGT---
NNAGGGGCGGGGTNNA
 A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T A C G T A C G T A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGAGGGCGCTGT
-RGKGGGCGGAGC
 A G T C G T C A A C T G T C G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A C T G A G C T
A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C