Information for 1-CGCCMYCTRGTGG (Motif 1)

A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
Reverse Opposite:
T G A C A G T C C G T A A T G C G A C T C G T A T A C G C T G A C A T G T A C G C A T G G A T C C T A G
p-value:1e-86
log p-value:-1.999e+02
Information Content per bp:1.712
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif8.44%
Number of Background Sequences with motif116.4
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets50.4 +/- 22.3bp
Average Position of motif in Background47.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CGCCMYCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.93
Offset:-6
Orientation:forward strand
Alignment:------CGCCMYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----CGCCMYCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGCCMYCTRGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGCCMYCTRGTGG
-GCCATCTGTT--
 A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGCCMYCTRGTGG
GCCGCCATCTTG---
 A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGCCMYCTRGTGG-
--CCCCCTGCTGTG
 A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCMYCTRGTGG--
GGCCYCCTGCTGDGH
 A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGCCMYCTRGTGG
GCNGCCATCTTG---
 A C G T A C G T A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGCCMYCTRGTGG
-ACCATCTGTT--
 A G T C C A T G G A T C A T G C G T A C A G C T A G T C G A C T C T G A T A C G G C A T A C T G A C T G
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T