Information for 4-AGCCCAGCCAATC (Motif 6)

T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C
Reverse Opposite:
A C T G T C G A G A C T C A G T A C T G A C T G A G T C A G C T A C T G T A C G C A T G T A G C A C G T
p-value:1e-14
log p-value:-3.284e+01
Information Content per bp:1.745
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif114.0
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets49.9 +/- 24.9bp
Average Position of motif in Background44.1 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGCCCAGCCAATC-
--ACTAGCCAATCA
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGCCCAGCCAATC
---BCAGACWA--
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGCCCAGCCAATC-----
---SCAGYCADGCATGAC
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCCCAGCCAATC--
TACGCCCCGCCACTCTG
 A C G T A C G T T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGCCCAGCCAATC---
-TCCCAGMCRAGCCCC
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGCCCAGCCAATC
-----TGCCAA--
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AGCCCAGCCAATC--
-----AGCCAATCGG
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGCCCAGCCAATC
---CGTGCCAAG-
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGCCCAGCCAATC
----CAGCC----
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGCCCAGCCAATC--
AAATGGACCAATCAG
 T G C A A T C G G T A C A T G C A G T C T C G A A C T G A G T C A G T C G T C A C T G A A C G T G T A C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G