Information for 17-TTGCCAGCCTGGC (Motif 27)

A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C T G A T C G A G T C A C G T A C T G A T C G A T G C G T C A C G T A
p-value:1e-7
log p-value:-1.752e+01
Information Content per bp:1.903
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.3 +/- 25.5bp
Average Position of motif in Background60.2 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTGCCAGCCTGGC
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTGCCAGCCTGGC---
-TCCCAGMCRAGCCCC
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCCTGGC
TTGCCAAG-----
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCCTGGC-
CTGGCAGNCTGCCA
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCCTGGC
TTGACAGC-----
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTGCCAGCCTGGC
ATGCCAACC----
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTGCCAGCCTGGC
---BCAGACWA--
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTGCCAGCCTGGC-----
---SCAGYCADGCATGAC
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTGCCAGCCTGGC
TGCCCAGNHW---
 A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAGCCTGGC
VBTGWCAGCB----
 A C G T A C G T A C G T A T C G A T G C A G T C C G T A A C T G A T G C A G T C C G A T A C T G A C T G A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T