Information for 3-GGTGAGACCACACAGA (Motif 5)

C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
Reverse Opposite:
A C G T T A G C A C G T A C T G C G A T T A C G A C G T A C T G A C T G A C G T A G T C G C A T G A T C G C T A A T G C A G T C
p-value:1e-12
log p-value:-2.763e+01
Information Content per bp:1.689
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif20.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.9 +/- 17.3bp
Average Position of motif in Background58.1 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGTGAGACCACACAGA
---GCGACCACACTG-
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGTGAGACCACACAGA
---NWAACCACADNN-
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGTGAGACCACACAGA
----AAACCACAGAN-
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGTGAGACCACACAGA
----GGACCACCCACG
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

RUNX3/MA0684.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGTGAGACCACACAGA
----AAACCGCAAA--
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGTGAGACCACACAGA
---NAAACCACAG---
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGTGAGACCACACAGA
----AAACCACANN--
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GGTGAGACCACACAGA
----AAACCACAGC--
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:GGTGAGACCACACAGA
---------ACAAAG-
C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGTGAGACCACACAGA
NNNVCTGWGYAAACASN--
A C G T A C G T A C G T C T A G A T C G C G A T C T A G C G T A A C T G T G C A T A G C T G A C T G C A A G T C C G T A G T A C T C G A A C T G T G C A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T