Information for 21-CTGGGATCAGCGCCAG (Motif 42)

A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C T G C G T A A C G T A G T C A G T C A G T C C G T A A C T G
p-value:1e-1
log p-value:-4.173e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 26.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGGATCAGCGCCAG
CTTGGCANNNTGCCAA
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTGGGATCAGCGCCAG
--NGGATTAN------
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGGGATCAGCGCCAG----
---AGCTCGGCGCCAAAAGC
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGGGATCAGCGCCAG----
---CCTTCGGCGCCAAAAGG
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTGGGATCAGCGCCAG
----RGTTAGTGCCCY
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTGGGATCAGCGCCAG
---GGATTAGC-----
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CTGGGATCAGCGCCAG
AGGGGGATTAGCTGCC-
 A C G T A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CTGGGATCAGCGCCAG
--TGGAACAGMA----
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGGGATCAGCGCCAG
-NNGGATTAGN-----
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTGGGATCAGCGCCAG
--GGGATTANN-----
 A G T C A C G T A C T G A C T G A C T G C G T A A C G T A G T C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A C T G
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T A C G T