Information for 19-CCMTGCTCGGCGGGCC (Motif 38)

A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
Reverse Opposite:
A C T G C T A G G T A C A T G C A G T C C T A G A G T C A G T C A T C G C G T A A C T G A G T C C T G A A C G T A C T G C T A G
p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.795
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.7 +/- 18.3bp
Average Position of motif in Background37.9 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCMTGCTCGGCGGGCC
TCNCCTGCTGNGNNN---
 A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCMTGCTCGGCGGGCC
TNTCCTGCTGTGNNG---
 A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCMTGCTCGGCGGGCC
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCMTGCTCGGCGGGCC
-CCTGCTGAGH-----
 A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCMTGCTCGGCGGGCC
CCCCCTGCTGTG------
 A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCMTGCTCGGCGGGCC--
GTCACGCTTGGCTGCNCNN
 A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCMTGCTCGGCGGGCC
NNTCCTGCTGTGNNN---
 A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCMTGCTCGGCGGGCC
---NGCTN--------
 A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCMTGCTCGGCGGGCC
----CGTGGGTGGTCC
 A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCMTGCTCGGCGGGCC
NNGCNCTGCGCGGC-----
 A C G T A C G T A C G T A G T C A G T C T G C A G A C T A C T G A G T C A C G T A T G C C T A G C T A G A G T C A C T G A T C G C A T G A G T C A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T A C G T A C G T