Information for 4-CTCATAGGGC (Motif 33)

A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
Reverse Opposite:
A C T G A G T C A G T C A G T C A C G T C G T A A C G T A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.917
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 26.0bp
Average Position of motif in Background48.7 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0128.1_Gcm1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTCATAGGGC-----
TGCGCATAGGGGAGGAG
 A C G T A C G T A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C A C G T A C G T A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Twist2/MA0633.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCATAGGGC
NACATATGGN
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Neurog1/MA0623.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCATAGGGC
ACCATATGGT
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCATAGGGC
CCGATTGGCT
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCATAGGGC
-ACATATGG-
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCATAGGGC
ACCATATGGC
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCATAGGGC-----
CTGATTGGTCNATTT
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCATAGGGC-
CCATATATGGNA
 A C G T A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C A C G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCATAGGGC-
TGCCCTGAGGGCA
 A C G T A C G T A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCATAGGGC--
--CAAAGGTCAG
 A G T C C G A T A G T C C G T A A C G T C G T A A C T G A C T G C T A G G T A C A C G T A C G T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G