Information for 1-CCTGCGHGCC (Motif 26)

A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G A G T C C T G A A T G C T C A G A T G C C G T A C T A G A T C G
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.790
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif331.8
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets49.1 +/- 24.5bp
Average Position of motif in Background49.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCTGCGHGCC-
-TTGCGTGCVA
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C A C G T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCTGCGHGCC
--AGCGCGCC
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTGCGHGCC
--TGCGTG--
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCTGCGHGCC-----
NTCGCGCGCCTTNNN
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCTGCGHGCC
NNGCNCTGCGCGGC
 A C G T A C G T A C G T A C G T A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCTGCGHGCC-----
ANCGCGCGCCCTTNN
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTGCGHGCC
NNCGCGTGNN
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCTGCGHGCC
--TACGTGCV
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C
A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTGCGHGCC-
CTTGAGTGGCT
 A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCGHGCC--
NNGTCGCGTGNCAC
 A C G T A C G T A T G C A G T C G C A T A T C G A G T C A T C G G A C T A C T G A T G C A G T C A C G T A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C