Information for 7-GAGAGAGAGACAG (Motif 14)

A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
Reverse Opposite:
A G T C A G C T A C T G A G C T A T G C A C G T A G T C A G C T A G T C G A C T A G T C G A C T A T G C
p-value:1e-10
log p-value:-2.388e+01
Information Content per bp:1.733
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.71%
Number of Background Sequences with motif386.0
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets53.7 +/- 22.5bp
Average Position of motif in Background50.5 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGACAG
AGGTGNCAGACAG
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGAGAGAGACAG-
--GAAAGTGAAAGT
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G A C G T
A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGAGAGAGACAG---
-AGAAAGTGAAAGTGA
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G A C G T A C G T A C G T
A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGAGAGAGACAG-
--NTGATTGACAGN
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGAGAGAGACAG--
---TGAGTGACAGSC
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGACAG
AGGTGHCAGACA-
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGACAG
GGCGGGGGCGGGGG
 A C G T A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGAGAGAGACAG-
--BTGABTGACAGS
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGACAG
TGCGTGGGYG----
 A C G T A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGACAG
GGGCGGGAAGG--
 A T C G C T G A A C T G C T G A C T A G C T G A A C T G G T C A A T C G T C G A T G A C T C G A T C A G
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T