Information for 7-CAGCTCCTAATGG (Motif 12)

A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G A T A C G T C T G A A C T G A C T G C T G A A C T G G T A C A C G T A C T G
p-value:1e-10
log p-value:-2.439e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 17.2bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CAGCTCCTAATGG-
------CTAATKGV
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

BARX1/MA0875.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CAGCTCCTAATGG-
------NTAATTGN
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

VENTX/MA0724.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CAGCTCCTAATGG--
------CTAATCGNT
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAGCTCCTAATGG-----
----CCTTAATNGNTTTT
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCTCCTAATGG
CTCAGCAGCTGCTACTG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGCTCCTAATGG---
------NTAATKGTTT
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

BSX/MA0876.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGCTCCTAATGG-
------NTAATTGG
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

ZNF410/MA0752.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGCTCCTAATGG--
TCCATCCCATAATACTC
 A C G T A C G T A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CAGCTCCTAATGG--
-----GTTAATGGCC
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGCTCCTAATGG--
-----GCTAATTGCT
 A G T C C G T A A C T G A G T C A G C T A G T C G T A C A G C T C G T A C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T