Information for 2-TGGCACTTCAGGTRGT (Motif 3)

C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
Reverse Opposite:
C T G A T A G C A G T C C T G A A G T C A G T C A C G T A T C G C G T A C G T A T C A G C A G T A C T G T A G C A G T C C G T A
p-value:1e-12
log p-value:-2.944e+01
Information Content per bp:1.721
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets60.1 +/- 23.2bp
Average Position of motif in Background37.0 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGGCACTTCAGGTRGT
--CCACTTGAA-----
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGCACTTCAGGTRGT---
--NANTTTCAAGTGGTTAN
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T A C G T A C G T A C G T
A C G T A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGGCACTTCAGGTRGT
-ACCACTTGAA-----
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCACTTCAGGTRGT
-RSCACTYRAG-----
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGCACTTCAGGTRGT
-NSCACTYVAV-----
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGGCACTTCAGGTRGT---
---AAATTCAAGTGGNTTN
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGCACTTCAGGTRGT
TAAGCCACTTGAAATT--
 A C G T A C G T C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGCACTTCAGGTRGT
TAAGCCACTTGAAATT--
 A C G T A C G T C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T

ERF/MA0760.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGGCACTTCAGGTRGT
---CACTTCCGGT---
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T A C G T A C G T A G T C T C G A A G T C C G A T A C G T A T G C A G T C A C T G T C A G A G C T A C G T A C G T A C G T

ELK1/MA0028.2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGGCACTTCAGGTRGT
---NACTTCCGGT---
 C G A T C T A G A T C G G T A C G T C A A G T C A C G T A C G T A T G C C G T A T C A G C T A G A G C T C T A G A C T G A G C T
A C G T A C G T A C G T G A T C T C G A A G T C C G A T A C G T T G A C T G A C A C T G A T C G G A C T A C G T A C G T A C G T