Information for 5-GGCTGTCACT (Motif 23)

A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T
Reverse Opposite:
C G T A A T C G C G A T A C T G T G C A A G T C C G T A A C T G A T G C G T A C
p-value:1e-6
log p-value:-1.583e+01
Information Content per bp:1.844
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif247.0
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets34.8 +/- 27.4bp
Average Position of motif in Background48.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGCTGTCACT--
GSCTGTCACTCA
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGCTGTCACT
VGCTGWCAVB
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTCACT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGTCACT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGCTGTCACT
-GCTGTCAA-
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GGCTGTCACT---
-NCTGTCAATCAN
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGTCACT-
TGTCTGDCACCT
 A C G T A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGCTGTCACT
-CCTGTCAA-
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGCTGTCACT---
-SCTGTCAVTCAV
 A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGCTGTCACT-
CTGTCTGTCACCT
 A C G T A C G T A C T G A T C G A G T C C G A T A C T G A C G T T G A C C G T A A T G C C G A T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T