Information for 5-CAKCSTTTRTKAWGRA (Motif 8)

A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
Reverse Opposite:
A C G T G A C T A G T C C G T A A C G T G T A C C G T A A G T C C G T A C G T A C G T A A T G C A C T G G T A C C G A T A C T G
p-value:1e-11
log p-value:-2.582e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 26.7bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAKCSTTTRTKAWGRA
---CCTTTGTT-----
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAKCSTTTRTKAWGRA---
----CTTTGTTATGCAAAT
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAKCSTTTRTKAWGRA
---CCWTTGTY-----
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T

PH0044.1_Homez/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAKCSTTTRTKAWGRA
AAAACATCGTTTTTAAG---
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAKCSTTTRTKAWGRA
NNNTCCTTTGTTCTNNN
 A C G T A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAKCSTTTRTKAWGRA
---CCTTTGTTTT---
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAKCSTTTRTKAWGRA
-ANCGTTTANN-----
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAKCSTTTRTKAWGRA---
----CATTGTTATGCAAAT
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAKCSTTTRTKAWGRA-
--NNCTNAATTATGANN
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A A C G T
A C G T A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAKCSTTTRTKAWGRA-
--NCNTTTGTTATTTNN
 A G T C C G T A A C T G A G T C T A C G C G A T A C G T A C G T C T A G A C G T A C T G C G T A C G A T A C T G C T G A C G T A A C G T
A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T