Information for 3-GACAGGCTTA (Motif 4)

C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A
Reverse Opposite:
G C A T G C T A C G T A C A T G G A T C T G A C G C A T C T A G A G C T G T A C
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.663
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif8.57%
Number of Background Sequences with motif1317.0
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets49.5 +/- 30.9bp
Average Position of motif in Background50.4 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GACAGGCTTA
--NGGGATTA
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GACAGGCTTA
TTGACAGC----
 A C G T A C G T C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACAGGCTTA
TTGACAGG----
 A C G T A C G T C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACAGGCTTA-----
TGAACCGGATTAATGAA
 A C G T A C G T C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACAGGCTTA-----
TGAACCGGATTAATGAA
 A C G T A C G T C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACAGGCTTA-
AAGAGGATTAG
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GACAGGCTTA-
---NGGATTAN
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GACAGGCTTA--
----GGATTAGC
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GACAGGCTTA--
--VRGGATTARN
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GACAGGCTTA--
---GGGATTANN
 C A T G T C G A G A T C C G T A A C T G C T A G G T A C G C A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G