Information for 6-CTAAGTAMTC (Motif 20)

A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
Reverse Opposite:
T C A G C G T A C A G T A C G T C G T A A G T C A C G T A G C T T G C A A C T G
p-value:1e-6
log p-value:-1.561e+01
Information Content per bp:1.779
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif114.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets52.1 +/- 30.1bp
Average Position of motif in Background51.1 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CTAAGTAMTC----
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGTAMTC-----
TTCNAAGTACTTNNNNN
 A C G T A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0039.1_Mnx1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAGTAMTC-
NNNCACTAATTANTNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTAAGTAMTC
TTAAGTGCTT
 A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGTAMTC----
CNTTAAGTACTTAANG
 A C G T A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0135.1_Phox2a/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTAAGTAMTC---
NNACTAATTAATNNNN
 A C G T A C G T A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C A C G T A C G T A C G T
A T G C A G C T T C G A G A T C A G C T G T C A C G T A A G C T A C G T C T G A C T G A A G C T C A T G T G A C A G C T T C A G

mix-a/MA0621.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAAGTAMTC
NCTAATTAANN
 A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

POU6F1/MA0628.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTAAGTAMTC
ATTAATTAAT-
 A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
T C G A G A C T G C A T G T C A G T C A A C G T C A G T C G T A C T G A A G C T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAAGTAMTC
CTAATTAG--
 A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTAAGTAMTC
ACTAATTAAC-
 A C G T A G T C A C G T C T G A G T C A C T A G C G A T C G T A G T C A C G A T A G T C
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T