Information for 20-AGGAGAGGCTTAG (Motif 18)

G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
Reverse Opposite:
A G T C A C G T G T C A C G T A A C T G A G T C A G T C A C G T A T G C A C G T A G T C A G T C C A G T
p-value:1e-7
log p-value:-1.739e+01
Information Content per bp:1.885
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 37.5bp
Average Position of motif in Background74.9 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGGAGAGGCTTAG
--AAGAGGATTAG
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Dmbx1/MA0883.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGAGAGGCTTAG----
TGAACCGGATTAATGAA
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGAGAGGCTTAG----
TGAACCGGATTAATGAA
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AGGAGAGGCTTAG-
------GGATTAGC
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGAGAGGCTTAG-
----VRGGATTARN
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGGAGAGGCTTAG
----NGGGATTA-
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGAGAGGCTTAG
-----AGGCCTNG
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGGAGAGGCTTAG
-----NGGATTAN
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGGAGAGGCTTAG-
-----GGGATTANN
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGGAGAGGCTTAG
-----AGGCCTAG
 G C T A A C T G A C T G C G T A A T C G C G T A A C T G A C T G A G T C A C G T A C G T C G T A C T A G
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G