Information for 5-TTAMTAGAGT (Motif 11)

A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
Reverse Opposite:
C G T A A T G C G A C T G T A C G A C T C G T A A C G T C G A T C G T A G T C A
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.650
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif6.36%
Number of Background Sequences with motif853.6
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets54.1 +/- 27.4bp
Average Position of motif in Background49.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTAMTAGAGT
TTTAATTGCN-
 A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTAMTAGAGT--
CCTTAATNGNTTTT
 A C G T A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTAMTAGAGT
TTTAAT-----
 A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTAMTAGAGT
ATATTAATTAA--
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTAMTAGAGT
GKTAATGR---
 A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTAMTAGAGT
TTAATTAN--
 A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTAMTAGAGT-
AGTTATTAATGAGGTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTAMTAGAGT---
AAATTAATTGATTTNG
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T A C G T A C G T A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTAMTAGAGT
NTTAATTAGN-
 A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTAMTAGAGT
NNTAATTAGN-
 A C G T A C G T A C G T C G T A T G C A G C A T C T G A C A T G C T G A T A C G C G A T
C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T