Information for 1-RCCASYAGGKGGCRST (Motif 1)

C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
Reverse Opposite:
C T G A T A C G G A C T C A T G T G A C A G T C G T A C A G T C G T A C G A C T C T A G A T C G C G A T A C T G T A C G G A T C
p-value:1e-414
log p-value:-9.551e+02
Information Content per bp:1.646
Number of Target Sequences with motif299.0
Percentage of Target Sequences with motif34.05%
Number of Background Sequences with motif304.1
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets53.8 +/- 14.9bp
Average Position of motif in Background51.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--RCCASYAGGKGGCRST-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RCCASYAGGKGGCRST----
GCCASCAGGGGGCGCYVNNG
 C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--RCCASYAGGKGGCRST--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RCCASYAGGKGGCRST
DCHCAGCAGGRGGCC--
 A C G T C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:RCCASYAGGKGGCRST
CACAGCAGGGGG----
 C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:RCCASYAGGKGGCRST
---AACAGATGGC---
 C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCCASYAGGKGGCRST
NCNCAGCGGGGGGTC--
 A C G T C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:RCCASYAGGKGGCRST---
--NNNAAGGGGGCGGGNNN
 C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RCCASYAGGKGGCRST
CACAGCGGGGGGTC--
 C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RCCASYAGGKGGCRST
CACCCCCGGGGGGG---
 A C G T C T A G A T G C A G T C G C T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T G A A T G C G A C T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T