Information for 7-YACAAAKARARCA (Motif 7)

A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A G T C A C G T G T A C A C G T A C G T C G A T A C T G A C G T C T A G
p-value:1e-12
log p-value:-2.764e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.5 +/- 23.3bp
Average Position of motif in Background31.5 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YACAAAKARARCA
-ACAAAG------
 A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----YACAAAKARARCA
ATGCTAAAAATAGAA--
 A C G T A C G T A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--YACAAAKARARCA
DCYAAAAATAGM---
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--YACAAAKARARCA
VRRACAAWGG-----
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:YACAAAKARARCA
-ACAAAGGNBCCT
 A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

MEF2A/MA0052.3/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YACAAAKARARCA
TCTAAAAATAGA---
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----YACAAAKARARCA
AAACAGACAAAGGAAT--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--YACAAAKARARCA
GCTAAAAATAGC---
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--YACAAAKARARCA
ACTATAAATAGA---
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--YACAAAKARARCA
GGAACAAAGR-----
 A C G T A C G T A G T C C G T A G T A C C G T A C G T A C G T A A C T G C G T A C T A G C G T A C T A G A G T C C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T