Information for 5-CGTGCCAGGGCCC (Motif 5)

A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
Reverse Opposite:
C A T G A C T G A C T G A G T C A G T C A G T C C G A T A C T G A C T G A G T C G T C A A G T C A T C G
p-value:1e-13
log p-value:-2.995e+01
Information Content per bp:1.825
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.7 +/- 24.7bp
Average Position of motif in Background79.9 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGTGCCAGGGCCC
ACATGCCCGGGCAT
 A C G T A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGTGCCAGGGCCC-
GGGGCCGAGGCCTG
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGTGCCAGGGCCC
CGTGCCAAG----
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTGCCAGGGCCC
-TTGCCAAG----
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGTGCCAGGGCCC
--TGCCAA-----
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGTGCCAGGGCCC
---NTCAAGGTCA
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGTGCCAGGGCCC
-----CTAGGCCT
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CGTGCCAGGGCCC--
-----CAAGGHCANV
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGTGCCAGGGCCC
GGTGCCAAGT---
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGTGCCAGGGCCC
---BTCAAGGTCA
 A T G C T A C G A C G T A C T G A G T C G T A C C G T A C T A G A C T G A C T G A G T C A G T C G T A C
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A