Information for 9-GGCAAGCCAA (Motif 25)

A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G A T C G A G T C A G C T A C G T A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.486e+01
Information Content per bp:1.929
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets60.9 +/- 22.8bp
Average Position of motif in Background48.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGCCAA
AAGGCAAGTGT-
 A C G T A C G T A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GGCAAGCCAA
----TGCCAA
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCAAGCCAA-
--CGTGCCAAG
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGCCAA
TBGCACGCAA-
 A C G T A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGCCAA
TTGCCAAG----
 A C G T A C G T A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGCAAGCCAA----
----AGCCAATCGG
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCAAGCCAA
-AAAAGTCAA
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCAAGCCAA
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCAAGCCAA--
--GGTGCCAAGT
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

IRF2/MA0051.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCAAGCCAA--------
GGAAAGCGAAACCAAAAC
 A C T G A C T G A G T C C G T A C T G A A C T G A T G C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C