Information for 16-RGCARRCCTGYTG (Motif 22)

C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G
Reverse Opposite:
G A T C C T G A C T A G A G T C C G T A C T A G A C T G A G T C A G T C A C G T A C T G A G T C A G C T
p-value:1e-7
log p-value:-1.722e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 23.3bp
Average Position of motif in Background59.8 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RGCARRCCTGYTG-----
---TNTCCTGCTGTGNNG
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.63
Offset:6
Orientation:forward strand
Alignment:RGCARRCCTGYTG---
------CCTGCTGAGH
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:RGCARRCCTGYTG-----
---NNTCCTGCTGTGNNN
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

SCRT1/MA0743.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RGCARRCCTGYTG---
-ANCCACCTGTTGCNC
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T
A C G T C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:RGCARRCCTGYTG---
---CCACCTGTTGCAT
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RGCARRCCTGYTG-----
---TCNCCTGCTGNGNNN
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RGCARRCCTGYTG
-CNAGGCCT----
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RGCARRCCTGYTG---
-GGCCYCCTGCTGDGH
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RGCARRCCTGYTG--
---CCCCCTGCTGTG
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RGCARRCCTGYTG
-CCTCACCTG---
 C T G A A C T G A G T C C G T A C T A G C T A G A G T C A G T C A C G T A C T G A G T C A G C T C T A G
A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T