Information for 4-ATAAACGTGT (Motif 3)

T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
Reverse Opposite:
T C G A G A T C C G T A T A G C C T A G C G A T A G C T A C G T C G T A A C G T
p-value:1e-24
log p-value:-5.648e+01
Information Content per bp:1.663
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.53%
Number of Background Sequences with motif585.5
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets48.3 +/- 23.7bp
Average Position of motif in Background50.4 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATAAACGTGT-
-AACACGTGTT
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T A C G T
A C G T C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T

Arnt/MA0004.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:ATAAACGTGT
---CACGTG-
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
A C G T A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ATAAACGTGT
--RTACGTGC
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ATAAACGTGT
-NVCACGTG-
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATAAACGTGT------
AATATACATGTAAAATT
 A C G T T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

Npas2/MA0626.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATAAACGTGT-
-GGCACGTGTC
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T A C G T
A C G T C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ATAAACGTGT
--GGACGTGC
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATAAACGTGT------
TAAATACATGTAAAATT
 A C G T T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

Hes2/MA0616.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATAAACGTGT-----
--GCACGTGTCNNNN
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

Mlxip/MA0622.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATAAACGTGT
--GCACGTGT
 T G C A G C A T T G C A T C G A G C T A G A T C A T C G C G A T C T A G A C G T
A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T