Information for 3-TMTATAAAGGCGC (Motif 7)

G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C
Reverse Opposite:
A C T G G T A C C A T G A G T C A G T C A G C T A C G T A C G T T C G A A C G T T C G A A C G T C T G A
p-value:1e-12
log p-value:-2.827e+01
Information Content per bp:1.777
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.9 +/- 28.9bp
Average Position of motif in Background54.5 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TMTATAAAGGCGC-
GTATAAAAGGCGGGG
 A C G T G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TMTATAAAGGCGC-
GTATAAAAGGCGGGG
 A C G T G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TMTATAAAGGCGC--
---ACAAAGGNBCCT
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TMTATAAAGGCGC--
-GGAGAAAGGTGCGA
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TMTATAAAGGCGC-----
---ATAAGGGCGCGCGAT
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TMTATAAAGGCGC
---ACAAAG----
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TMTATAAAGGCGC-----
---ATAAAGGCGCGCGAT
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TMTATAAAGGCGC
GNCTATAAAAGG----
 A C G T A C G T A C G T G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TMTATAAAGGCGC------
---AAAATGGCGCCATTTT
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TMTATAAAGGCGC-------
--AAAAATGGCGCCATTTTT
 G A C T T G C A A C G T C G T A A G C T C G T A G T C A C T G A A C T G T A C G G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T