Information for 20-CCTGCTGCTCCGC (Motif 26)

A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
Reverse Opposite:
A C T G G T A C C T A G A C T G C G T A C T A G A G T C C G T A A C T G G T A C T G C A A C T G A C T G
p-value:1e-7
log p-value:-1.637e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.9 +/- 30.6bp
Average Position of motif in Background48.5 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTGCTGCTCCGC
CCTGCTGAGH---
 A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.65
Offset:6
Orientation:forward strand
Alignment:CCTGCTGCTCCGC
------GCTCCG-
 A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCTCCGC
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGCTCCGC
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCTCCGC
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCTCCGC
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCTCCGC
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCTGCTGCTCCGC
-CAGCTGNT----
 A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGCTGCTCCGC
--TKCTGTTCCA-
 A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGCTCCGC
CCAGCTGTTN---
 A G T C A G T C A C G T A C T G A G T C C G A T A C T G A G T C A C G T A G T C A G T C A C T G A G T C
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T