Information for 7-CTTTTATAAC (Motif 15)

A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C
Reverse Opposite:
C T A G A C G T A C G T C G T A C G A T T G C A C G T A C G T A G T C A A C T G
p-value:1e-9
log p-value:-2.261e+01
Information Content per bp:1.852
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif43.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets66.0 +/- 26.9bp
Average Position of motif in Background50.2 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTATAAC
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTATAAC
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTTTTATAAC-
CCTTTTATAGNC
 A C G T A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTTTTATAAC
NTTTTATGAC
 A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTTTTATAAC
-TTTTATTGC
 A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTTTTATAAC--
-TTTTATGGCTN
 A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTTTTATAAC-
NTTTTATTACN
 A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTTTTATAAC-
-TTTTATTRGN
 A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTATAAC----
NAATTTTATTACCTNN
 A C G T A C G T A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTATAAC-
DGWTTTATGRCN
 A C G T A G T C A C G T A C G T C G A T A C G T C G T A C G A T C G T A T C G A A G T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C