Information for 18-GAAGGHVGGBCACCAC (Motif 31)

A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
Reverse Opposite:
T A C G A G C T A T C G A T C G A C G T A T C G T G C A A G T C A G T C A C G T C T G A A G T C G T A C C G A T A G C T A G T C
p-value:1e-9
log p-value:-2.076e+01
Information Content per bp:1.744
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.6 +/- 13.8bp
Average Position of motif in Background57.0 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
------AGGTCA----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
-----AAGGTCAC---
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
--AAYTAGGTCA----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
--ATCAAGGTCA----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGGHVGGBCACCAC-
-NNNNTTGGGCACNNCN
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C A C G T
A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

SP2/MA0516.1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAAGGHVGGBCACCAC
GGGNGGGGGCGGGGC-----
 A C G T A C G T A C G T A C G T A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAAGGHVGGBCACCAC
TATAAGTAGGTCAA---
 A C G T A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
----AGRGGTCA----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAAGGHVGGBCACCAC
GGGGGCGGGGC-----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAAGGHVGGBCACCAC
----TRAGGTCA----
 A C T G T C G A C G T A A C T G A C T G G A C T T C G A T A C G A C T G A C G T A T G C C G T A A T G C A T G C T C G A A T G C
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T