Information for 7-AGGTGAGAGGCAA (Motif 16)

C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
Reverse Opposite:
G A C T G A C T A C T G A G T C A G T C C G A T G T A C A G C T A G T C G C T A A G T C A G T C G C A T
p-value:1e-10
log p-value:-2.412e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif42.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets45.3 +/- 21.5bp
Average Position of motif in Background46.9 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGGTGAGAGGCAA
AGGTGNCAGACAG
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTGAGAGGCAA
AGGTGHCAGACA-
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGTGAGAGGCAA
CAGGTAAGTAT---
 A C G T C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGAGAGGCAA
CAGGTGAGG-----
 A C G T C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTGAGAGGCAA
AGGGGTCAGAGGTCA
 A C G T A C G T C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

TBX15/MA0803.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGTGAGAGGCAA
AGGTGTGA-----
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGTGAGAGGCAA
GAGGTCAAAGGTCA
 A C G T C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGTGAGAGGCAA-
--BTGABTGACAGS
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGTGAGAGGCAA
AGGTGTGA-----
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGTGAGAGGCAA
AGGTGTGA-----
 C G T A C T A G C T A G C A G T C T A G C T G A A C T G G C T A A C T G A C T G G T A C C G T A C T G A
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T