Information for 11-GARAGATGAGCAAGMC (Motif 15)

A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
Reverse Opposite:
A C T G A C G T A G T C A G C T A C G T A C T G A G T C A C G T A T G C G C T A A C G T A G T C A G C T A G C T A C G T A T G C
p-value:1e-10
log p-value:-2.470e+01
Information Content per bp:1.793
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif29.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets55.5 +/- 22.4bp
Average Position of motif in Background42.6 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC-
--GAGCACAGCAGGACA
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GARAGATGAGCAAGMC
----DCTCAGCAGG--
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC
-------CAGCC----
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC-
--CCACACAGCAGGAGA
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GARAGATGAGCAAGMC
-ANAGATAAGAA----
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC-
--CCACACAGCAGGAGA
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC
-----ANCAGGAAGT-
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T A C G T A C G T A C G T A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC-
-----CACAGCAGGGGG
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SPIC/MA0687.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC
--AAAAAGAGGAAGTA
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T A C G T G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GARAGATGAGCAAGMC
-AAGGKGRCGCAGGCA
 A T C G G T C A C T A G C T G A A C T G G T C A C A G T A T C G C G T A A C T G A G T C C G T A C T G A A C T G G T A C G T A C
A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A