Information for 8-TGGCTTGKCACTGTCC (Motif 12)

A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
Reverse Opposite:
C T A G A C T G T C G A A G T C C G T A A T C G C A G T A C T G G T C A G T A C G T C A C G T A A C T G A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.779
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.9 +/- 20.7bp
Average Position of motif in Background69.5 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTGKCACTGTCC-
BTGACCTCTNNHTGACCY
 A C G T A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGGCTTGKCACTGTCC
--NNTTGGCANN----
 A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

XBP1/MA0844.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTTGKCACTGTCC
GATGACGTGGCANT----
 A C G T A C G T A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
T C A G T G C A G A C T A C T G T C G A G A T C C T A G G A C T T C A G C A T G G T A C T G C A G A C T G C A T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTTGKCACTGTCC
TTGACTTTT--------
 A C G T A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TGGCTTGKCACTGTCC
---NTTGGCANN----
 A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTTGKCACTGTCC
NGATGACGTGGCAN-----
 A C G T A C G T A C G T A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
A G C T C A T G T C G A G A C T A C T G C G T A G A T C A C T G C G A T A T C G C A T G G T A C T C G A A G T C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGGCTTGKCACTGTCC
---CTTGGCAA-----
 A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGGCTTGKCACTGTCC
----TTGGCA------
 A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTTGKCACTGTCC
TGATGACGTGGCAN-----
 A C G T A C G T A C G T A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGCTTGKCACTGTCC-
TGACCTCTCNNTGACCT
 A C G T T C A G T A C G A G T C A C G T A C G T A C T G A C G T A G T C G C T A A T G C C G A T A C T G A C G T A G T C A G T C A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T