Information for 1-CTTGCCATTC (Motif 6)

A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
Reverse Opposite:
A T C G T C G A G T C A A C G T T A C G T C A G T G A C T G C A C T G A T A C G
p-value:1e-11
log p-value:-2.537e+01
Information Content per bp:1.662
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif7.37%
Number of Background Sequences with motif1059.8
Percentage of Background Sequences with motif2.29%
Average Position of motif in Targets58.3 +/- 24.7bp
Average Position of motif in Background49.8 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCCATTC
NNACTTGCCTT--
 A C G T A C G T A C G T A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTTGCCATTC--
SCTGTCAVTCAV
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTGCCATTC
CTTGGCAA--
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTTGCCATTC--
NCTGTCAATCAN
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTTGCCATTC
-YTGWCADY-
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCCATTC
NNTTGGCANN-
 A C G T A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGCCATTC
NTTGGCANN-
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGCCATTC-
GSCTGTCACTCA
 A C G T A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTTGCCATTC
--TGTCANYT
 A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTGCCATTC----
ACTATGCCAACCTACC
 A C G T A C G T A T G C G A C T A C G T A C T G A G T C A T G C T G C A C A G T A G C T T A G C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C