Information for 9-CCAGAGGGAGGCAGAG (Motif 18)

A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
Reverse Opposite:
A G T C A C G T G T A C C G A T A C T G A T G C A G T C A C G T A G T C A G T C G T A C A C G T A G T C A C G T C T A G A T C G
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.794
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets61.9 +/- 20.9bp
Average Position of motif in Background39.9 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCAGAGGGAGGCAGAG
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAGAGGGAGGCAGAG
CAAGATGGCGGC----
 A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGGGAGGCAGAG
DCHCAGCAGGRGGCC---
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGGGAGGCAGAG
TGGCCACCAGGGGGCGCTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAGGGAGGCAGAG
SMCAGTCWGAKGGAGGAGGC-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CCAGAGGGAGGCAGAG-
-------GAGSCCGAGC
 A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGAGGCAGAG
AACAGATGGC-------
 A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CCAGAGGGAGGCAGAG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAGAGGGAGGCAGAG
CAAGATGGCGGC----
 A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCAGAGGGAGGCAGAG
NCNCAGCGGGGGGTC---
 A C G T A C G T A T G C A G T C C G T A A C T G T G C A A C T G A C T G A C T G G T C A A C T G A T C G A G T C C G T A A C T G T G C A C T A G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T