Information for 4-GGGGTCACGT (Motif 12)

A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T
Reverse Opposite:
T C G A A G T C A T C G A G C T A T C G G T C A A G T C A G T C G T A C A G T C
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.833
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif131.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets47.6 +/- 24.9bp
Average Position of motif in Background48.4 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTCACGT--
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

E-box(bHLH)/Promoter/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGGGTCACGT--
CCGGTCACGTGA
 A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCACGT--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCACGT-
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GGGGTCACGT---
--GGTCACGTGGC
 A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCACGT--
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCACGT-
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Arntl/MA0603.1/Jaspar

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGGGTCACGT--
--GGTCACGTGC
 A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCACGT
AGRGGTCA---
 A C G T A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGGGTCACGT--
--GGTCACGTGA
 A C T G C A T G C T A G T C A G C A G T A T G C T C G A A T G C A C T G A G C T A C G T A C G T
A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A