Information for 15-SAGTGSCAGMGCM (Motif 22)

A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
Reverse Opposite:
A C T G A T C G A G T C A C G T A G T C C G A T A C T G A T C G A G T C C G T A A G T C A C G T A T C G
p-value:1e-8
log p-value:-1.882e+01
Information Content per bp:1.869
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif39.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.3 +/- 24.1bp
Average Position of motif in Background50.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--SAGTGSCAGMGCM
NTGATTGACAGN---
 A C G T A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:SAGTGSCAGMGCM
--GAGSCCGAGC-
 A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--SAGTGSCAGMGCM
BTGABTGACAGS---
 A C G T A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SAGTGSCAGMGCM
--TTGCCAAG---
 A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:SAGTGSCAGMGCM
-VBTGWCAGCB--
 A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-SAGTGSCAGMGCM
TGAGTGACAGSC--
 A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--SAGTGSCAGMGCM
TTRAGTGSYK-----
 A C G T A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:SAGTGSCAGMGCM
-CGTGCCAAG---
 A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---SAGTGSCAGMGCM
CTYRAGTGSY------
 A C G T A C G T A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SAGTGSCAGMGCM
TTGAGTGSTT-----
 A C G T A C G T A T G C C G T A A C T G A C G T A C T G A T G C A G T C C G T A A C T G T G C A A C T G A T G C G T A C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T