Information for 13-GGTGAGTTCAAAC (Motif 19)

A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T A C T G C G T A C G T A A G T C A C G T A G T C G T C A A G T C A G T C
p-value:1e-8
log p-value:-1.905e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.4 +/- 24.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGTTCAAAC
CAGGTAAGTAT----
 A C G T A C G T A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGTGAGTTCAAAC
----NATTCAAAT
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGTGAGTTCAAAC-
----ACATCAAAGG
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGTGAGTTCAAAC
NGATGACGTCAT--
 A C G T A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGTGAGTTCAAAC
--TRAGGTCA---
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGTGAGTTCAAAC
--CGGTTTCAAA-
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGTGAGTTCAAAC----
--AGNGTTCTAATGANN
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGTGAGTTCAAAC-
----ACWTCAAAGG
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTGAGTTCAAAC
NRRTGACGTCAT--
 A C G T A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGTGAGTTCAAAC---
--AAAGATCAAAGGAA
 A C T G A C T G A C G T A C T G C G T A A C T G A C G T C G A T G T A C C G T A G T C A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A