Information for 11-CTTGSCCTCTGAG (Motif 16)

A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
Reverse Opposite:
A T G C A G C T A G T C G C T A A C T G G T C A A C T G A C T G A T G C G T A C G T C A C G T A C T A G
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.793
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif35.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets53.3 +/- 31.0bp
Average Position of motif in Background50.6 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTGSCCTCTGAG
-CTGACCTTTG--
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTTGSCCTCTGAG
CNNTTGACCTTTG--
 A C G T A C G T A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTTGSCCTCTGAG-
NNNNTGACCTTTNNNN
 A C G T A C G T A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTTGSCCTCTGAG
--TGACCTYA---
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTGSCCTCTGAG
--TGACCYCT---
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTTGSCCTCTGAG
TGACCTTGACCT-----
 A C G T A C G T A C G T A C G T A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTTGSCCTCTGAG-
NNNGTGACCTTTGNNN
 A C G T A C G T A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTGSCCTCTGAG---
--TGACCTTTGACCTC
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G A C G T A C G T A C G T
A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTTGSCCTCTGAG--
--TGCCCTGAGGGCA
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTTGSCCTCTGAG
-ATGCCCTGAGGC
 A G T C G C A T A C G T A C T G T A C G A G T C G T A C A C G T T G A C C A G T A C T G C T G A A T C G
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C