Information for 13-CTGCCAATTGGCA (Motif 27)

A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A T C G
p-value:1e-5
log p-value:-1.185e+01
Information Content per bp:1.924
Number of Target Sequences with motif201.0
Percentage of Target Sequences with motif22.74%
Number of Background Sequences with motif7877.7
Percentage of Background Sequences with motif16.99%
Average Position of motif in Targets49.2 +/- 24.7bp
Average Position of motif in Background49.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTGCCAATTGGCA-
CCGCCCAAGGGCAG
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A C G T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CTGCCAATTGGCA--
-----NNTTGGCANN
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CTGCCAATTGGCA--
------NTTGGCANN
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTGCCAATTGGCA
-TGCCAA------
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGCCAATTGGCA
-TGACAGCTGTCA
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAATTGGCA--
ACNNCTAATTAGNNNN
 A C G T A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

TGIF1/MA0796.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGCCAATTGGCA
-TGACAGCTGTCA
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CTGCCAATTGGCA-
-----GGTTGGCAT
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PKNOX1/MA0782.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGCCAATTGGCA
-TGACACCTGTCA
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGCCAATTGGCA
TTGCCAAG-----
 A T G C A C G T A C T G A G T C A G T C C G T A C T G A A G C T A C G T A C T G A C T G A G T C C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T