Information for 9-TGAGCACAGCAGC (Motif 17)

A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
Reverse Opposite:
A T C G G T A C A C G T A C T G A G T C A C G T A T C G A C G T A C T G A G T C A C G T A T G C C G T A
p-value:1e-9
log p-value:-2.276e+01
Information Content per bp:1.910
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.1 +/- 24.9bp
Average Position of motif in Background61.2 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGAGCACAGCAGC---
-GAGCACAGCAGGACA
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TGAGCACAGCAGC---
----CACAGCAGGGGG
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGAGCACAGCAGC---
-CCACACAGCAGGAGA
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGAGCACAGCAGC---
-CCACACAGCAGGAGA
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGAGCACAGCAGC-----
---DCHCAGCAGGRGGCC
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGAGCACAGCAGC
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGAGCACAGCAGC
---DCTCAGCAGG
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGAGCACAGCAGC
----CACAGN---
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAGCACAGCAGC
AAACCACAGC---
 A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGAGCACAGCAGC
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G A G T C C G T A A T G C C G T A A C T G A G T C C G T A A C T G A T G C
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T