Information for 5-CAGCCGGGTCAGCGTG (Motif 8)

A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
Reverse Opposite:
A G T C C T G A A G T C A C T G T A G C A C G T A C T G T C G A A G T C A G T C A G T C A C T G A C T G A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.3 +/- 33.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGCCGGGTCAGCGTG
CGCGCCGGGTCACGTA-
 A C G T A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CAGCCGGGTCAGCGTG----
-----AGGTCACCCTGACCT
 A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGCCGGGTCAGCGTG
AGAGCGGGGTCAAGTA-
 A C G T A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGCCGGGTCAGCGTG---
----NAGGTCACNNTGACC
 A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGCCGGGTCAGCGTG-----
----CAGGTCACCGTGACCTT
 A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

SPDEF/MA0686.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCGGGTCAGCGTG
TACATCCGGGT-------
 A C G T A C G T A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGCCGGGTCAGCGTG
-----AGGTCA-----
 A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCCGGGTCAGCGTG
CAGCC-----------
 A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCGGGTCAGCGTG
DCTCAGCAGG---------
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGCCGGGTCAGCGTG
CACAGCAGGGGG------
 A C G T A C G T A G T C C G T A A C T G A G T C A G T C T A C G A C T G A C T G A C G T G T A C C G T A A C T G T A G C A C T G A G C T A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T