Information for 12-GSCMGGMAGGCAG (Motif 23)

A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T C T A G A G T C A G T C A C G T A C T G A G T C A G T C A C G T C T A G A T G C A G T C
p-value:1e-6
log p-value:-1.404e+01
Information Content per bp:1.890
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 10.8bp
Average Position of motif in Background55.4 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GSCMGGMAGGCAG
TGGCAGNCTGCCAG
 A C G T A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GSCMGGMAGGCAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GSCMGGMAGGCAG
TGCCCTGAGGGCA-
 A C G T A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GSCMGGMAGGCAG
TGCCCNNAGGGCA-
 A C G T A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GSCMGGMAGGCAG
TGCCCTNAGGGCA-
 A C G T A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

MF0001.1_ETS_class/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GSCMGGMAGGCAG
-ACCGGAAG----
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GSCMGGMAGGCAG
AACCGGAAGT---
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
T C G A C T G A T A G C T G A C T C A G T C A G C G T A C G T A T C A G A G C T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GSCMGGMAGGCAG---
NGTAGGTTGGCATNNN
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GSCMGGMAGGCAG
NACCGGAAGT---
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G
T C G A T C G A T A G C G T A C T C A G T A C G C G T A C G T A T C A G A G C T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GSCMGGMAGGCAG---
-SCAGYCADGCATGAC
 A C T G A T C G A G T C G T C A A C T G A C T G G T A C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C