Information for 4-GGAGATCTAT (Motif 19)

A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T
Reverse Opposite:
C T G A C G A T C G T A C T A G C G T A A C G T A G T C C G A T A G T C G T A C
p-value:1e-7
log p-value:-1.806e+01
Information Content per bp:1.863
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif72.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets37.0 +/- 31.1bp
Average Position of motif in Background51.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGAGATCTAT--
--DGATCRATAN
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T
A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGAGATCTAT----
-NTGATTTATGGCC
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAGATCTAT
HNRAATCAAT
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGAGATCTAT---
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGAGATCTAT---
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGAGATCTAT----
NNNGTGACCTTTGNNN
 A C G T A C G T A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGAGATCTAT----
--TGATTTATGGCC
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGAGATCTAT------
GAAGATCAATCACTAA
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGATCTAT---
--TGATTTATGGC
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAGATCTAT----
--TGATTTATGGCC
 A C T G A C T G C G T A C T A G C G T A G C A T A G T C A C G T C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C